It feels like you've got two topics merged into one thread...
1) Should BGA arena allow abandoning games based on initial game state? (Or a question you didn't ask but is closely related... what about abandoning based on opponent elo?)
2) Does Ark Nova have a significant first player advantage?
I imagine both have been discussed previously, but for the second I'm more aware of the prior discussions. The reference you quoted, pulling out specifically a 54.7% first player win rate (out of 128 games) is a rather small data set. The 95% confidence interval for that data is win rate 45.7% - 63.5%; so by commonly used definitions of statistically significant "proof", it can't be used to conclude that any first player advantage exists at all (you'd want 50% to fall outside the confidence interval.
A recent large tournament of top players actually had a "second player advantage" in its win rate. Again, it was a small sample size, so not statistically significant proof of a second player advantage, but it's an example of how small data sets can give highly variable results.
I believe a more recent look at a much larger selection of high-elo 2-player games found a first player win rate somewhere around 51%. I don't have the number of games for that statistic, so can't calculate the confidence interval on it.
Intuitively, I personally feel like first player should be a big advantage, but in terms of the statistics that have been made available nothing has conclusively shown that thus far (and arguably the look at the largest data set I've seen implies any advantage is quite small if it exists at all).